-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.4
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.4static.report.2016.09.01.20.18.48.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            4.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775528406
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 145.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   41994250
         Time       10.0 m (4.1% of max. 4.0 h)
         Re-anneals 440 (1.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   81553000
         Time       20.0 m (8.3% of max. 4.0 h)
         Re-anneals 828 (3.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   120024000
         Time       30.0 m (12.5% of max. 4.0 h)
         Re-anneals 1213 (4.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   160457250
         Time       40.0 m (16.6% of max. 4.0 h)
         Re-anneals 1650 (6.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   202347500
         Time       50.0 m (20.8% of max. 4.0 h)
         Re-anneals 2098 (8.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   245990000
         Time       1.0 h (25.0% of max. 4.0 h)
         Re-anneals 2528 (10.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   289788000
         Time       1.17 h (29.1% of max. 4.0 h)
         Re-anneals 2964 (11.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   334164750
         Time       1.33 h (33.3% of max. 4.0 h)
         Re-anneals 3424 (13.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   378439500
         Time       1.5 h (37.5% of max. 4.0 h)
         Re-anneals 3881 (15.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   422960250
         Time       1.67 h (41.6% of max. 4.0 h)
         Re-anneals 4326 (17.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   466894500
         Time       1.83 h (45.8% of max. 4.0 h)
         Re-anneals 4771 (19.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   511691250
         Time       2.0 h (50.0% of max. 4.0 h)
         Re-anneals 5220 (20.8% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -8233.8204, first found at iteration 295108466
51
 0 3 1 39 46
 1 2 4 22
 2 1 13
 3 2 13 29
 4 1 27
 5 1 13
 6 2 14 35
 7 2 20 22
 8 2 5 50
 9 2 0 40
10 2 3 50
11 2 13 16
12 2 20 42
13 0
14 2 4 13
15 2 17 41
16 2 13 37
17 2 2 13
18 2 3 40
19 2 11 49
20 2 17 49
21 2 18 35
22 2 12 49
23 2 5 17
24 1 27
25 2 3 44
26 2 28 43
27 2 3 23
28 2 3 23
29 2 17 23
30 2 40 44
31 2 13 42
32 2 44 50
33 3 0 12 23
34 2 17 28
35 2 4 13
36 4 0 2 6 39
37 2 24 32
38 2 29 32
39 2 28 40
40 3 8 13 29
41 2 29 34
42 2 13 23
43 2 19 23
44 3 3 14 20
45 2 22 23
46 2 11 48
47 2 4 13
48 2 10 20
49 2 13 14
50 2 4 13

-----------------------------------------------------------------------------


Status:  Networks   556208250
         Time       2.17 h (54.1% of max. 4.0 h)
         Re-anneals 5681 (22.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   600493500
         Time       2.33 h (58.3% of max. 4.0 h)
         Re-anneals 6154 (24.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   645262000
         Time       2.5 h (62.5% of max. 4.0 h)
         Re-anneals 6627 (26.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   691410750
         Time       2.67 h (66.6% of max. 4.0 h)
         Re-anneals 7088 (28.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   739830500
         Time       2.83 h (70.8% of max. 4.0 h)
         Re-anneals 7597 (30.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   788465250
         Time       3.0 h (75.0% of max. 4.0 h)
         Re-anneals 8109 (32.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   837308500
         Time       3.17 h (79.1% of max. 4.0 h)
         Re-anneals 8611 (34.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   886118000
         Time       3.33 h (83.3% of max. 4.0 h)
         Re-anneals 9087 (36.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   934156000
         Time       3.5 h (87.5% of max. 4.0 h)
         Re-anneals 9587 (38.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   982238250
         Time       3.67 h (91.6% of max. 4.0 h)
         Re-anneals 10062 (40.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1030942000
         Time       3.83 h (95.8% of max. 4.0 h)
         Re-anneals 10583 (42.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1079697250
         Time       4.0 h (100.0% of max. 4.0 h)
         Re-anneals 11090 (44.3% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8207.3372, first found at iteration 659204937
51
 0 3 1 28 46
 1 2 4 12
 2 3 0 28 48
 3 2 13 20
 4 2 35 50
 5 2 13 25
 6 2 13 36
 7 2 3 20
 8 2 0 27
 9 2 40 42
10 2 12 14
11 2 6 33
12 2 13 42
13 0
14 2 13 29
15 2 28 48
16 2 11 35
17 2 28 39
18 1 27
19 2 16 40
20 1 13
21 2 6 40
22 2 3 12
23 2 6 28
24 2 11 27
25 2 3 40
26 2 12 40
27 2 3 36
28 2 3 5
29 2 17 23
30 2 3 40
31 2 13 42
32 2 44 45
33 2 0 14
34 2 17 28
35 2 13 21
36 2 3 26
37 2 27 38
38 2 11 19
39 2 6 42
40 2 7 13
41 2 15 28
42 2 3 49
43 2 3 26
44 2 3 13
45 2 11 40
46 2 14 18
47 1 27
48 2 17 33
49 2 5 20
50 2 14 17


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 1079697250
  Total time used: 4.0 h
  High score: -8207.3372, first found at iteration 659204937
  Number of re-anneals: 11090

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    359860830
  Deletions -- proposed:    359969113
  Reversals -- proposed:    359867306

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  359860830,  acyclic:  258086228
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  359867306,  acyclic:  239186870

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          396070853
  Scores (cache)            placed         fetched        
      with 0 parents:       51             42363775       
      with 1 parents:       2550           522637957      
      with 2 parents:       57706247       27877580       
      with 3 parents:       317319776      102264298      
      with 4 parents:       19713058       5022003        
      with 5 parents:       1329171        195267         

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  258086228,  better score:  14389315,  other accepted:  10157663
  Deletions -- considered:  359969113,  better score:  10482798,  other accepted:  14064083
  Reversals -- considered:  239186870,  better score:  16220000,  other accepted:  8596534
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8207.3372, found by thread 1
51
 0 3 1 28 46
 1 2 4 12
 2 3 0 28 48
 3 2 13 20
 4 2 35 50
 5 2 13 25
 6 2 13 36
 7 2 3 20
 8 2 0 27
 9 2 40 42
10 2 12 14
11 2 6 33
12 2 13 42
13 0
14 2 13 29
15 2 28 48
16 2 11 35
17 2 28 39
18 1 27
19 2 16 40
20 1 13
21 2 6 40
22 2 3 12
23 2 6 28
24 2 11 27
25 2 3 40
26 2 12 40
27 2 3 36
28 2 3 5
29 2 17 23
30 2 3 40
31 2 13 42
32 2 44 45
33 2 0 14
34 2 17 28
35 2 13 21
36 2 3 26
37 2 27 38
38 2 11 19
39 2 6 42
40 2 7 13
41 2 15 28
42 2 3 49
43 2 3 26
44 2 3 13
45 2 11 40
46 2 14 18
47 1 27
48 2 17 33
49 2 5 20
50 2 14 17

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (46,0) ->   (0,0)   .1108
Influence score for  (28,0) ->   (0,0)   .0343
Influence score for   (1,0) ->   (0,0)   -.4279
Influence score for  (12,0) ->   (1,0)   -.3331
Influence score for   (4,0) ->   (1,0)   .2881
Influence score for  (48,0) ->   (2,0)   .2432
Influence score for  (28,0) ->   (2,0)   .0000
Influence score for   (0,0) ->   (2,0)   -.0652
Influence score for  (20,0) ->   (3,0)   .3039
Influence score for  (13,0) ->   (3,0)   .3307
Influence score for  (50,0) ->   (4,0)   .1850
Influence score for  (35,0) ->   (4,0)   .0000
Influence score for  (25,0) ->   (5,0)   .4972
Influence score for  (13,0) ->   (5,0)   .2654
Influence score for  (36,0) ->   (6,0)   .3307
Influence score for  (13,0) ->   (6,0)   .4923
Influence score for  (20,0) ->   (7,0)   .0000
Influence score for   (3,0) ->   (7,0)   .0000
Influence score for  (27,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.3834
Influence score for  (42,0) ->   (9,0)   .3712
Influence score for  (40,0) ->   (9,0)   .0000
Influence score for  (14,0) ->  (10,0)   .0000
Influence score for  (12,0) ->  (10,0)   .0000
Influence score for  (33,0) ->  (11,0)   .0000
Influence score for   (6,0) ->  (11,0)   .4190
Influence score for  (42,0) ->  (12,0)   .3307
Influence score for  (13,0) ->  (12,0)   .3307
Influence score for  (29,0) ->  (14,0)   .4951
Influence score for  (13,0) ->  (14,0)   .0000
Influence score for  (48,0) ->  (15,0)   .3010
Influence score for  (28,0) ->  (15,0)   .0000
Influence score for  (35,0) ->  (16,0)   -.3519
Influence score for  (11,0) ->  (16,0)   .4075
Influence score for  (39,0) ->  (17,0)   .6456
Influence score for  (28,0) ->  (17,0)   .0000
Influence score for  (27,0) ->  (18,0)   .0000
Influence score for  (40,0) ->  (19,0)   .0000
Influence score for  (16,0) ->  (19,0)   .0000
Influence score for  (13,0) ->  (20,0)   .8641
Influence score for  (40,0) ->  (21,0)   .0000
Influence score for   (6,0) ->  (21,0)   .0444
Influence score for  (12,0) ->  (22,0)   .2434
Influence score for   (3,0) ->  (22,0)   .0000
Influence score for  (28,0) ->  (23,0)   .0000
Influence score for   (6,0) ->  (23,0)   .3307
Influence score for  (27,0) ->  (24,0)   .0000
Influence score for  (11,0) ->  (24,0)   .0000
Influence score for  (40,0) ->  (25,0)   .0000
Influence score for   (3,0) ->  (25,0)   .3307
Influence score for  (40,0) ->  (26,0)   .0000
Influence score for  (12,0) ->  (26,0)   .0000
Influence score for  (36,0) ->  (27,0)   .1989
Influence score for   (3,0) ->  (27,0)   .0000
Influence score for   (5,0) ->  (28,0)   .3130
Influence score for   (3,0) ->  (28,0)   .0000
Influence score for  (23,0) ->  (29,0)   .0000
Influence score for  (17,0) ->  (29,0)   .2840
Influence score for  (40,0) ->  (30,0)   -.3311
Influence score for   (3,0) ->  (30,0)   .0502
Influence score for  (42,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (45,0) ->  (32,0)   .1664
Influence score for  (44,0) ->  (32,0)   .4776
Influence score for  (14,0) ->  (33,0)   .7191
Influence score for   (0,0) ->  (33,0)   .1032
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (21,0) ->  (35,0)   .0000
Influence score for  (13,0) ->  (35,0)   .1363
Influence score for  (26,0) ->  (36,0)   -.6432
Influence score for   (3,0) ->  (36,0)   .0000
Influence score for  (38,0) ->  (37,0)   -.3331
Influence score for  (27,0) ->  (37,0)   .2475
Influence score for  (19,0) ->  (38,0)   .1623
Influence score for  (11,0) ->  (38,0)   .0772
Influence score for  (42,0) ->  (39,0)   .0000
Influence score for   (6,0) ->  (39,0)   .3164
Influence score for  (13,0) ->  (40,0)   .3696
Influence score for   (7,0) ->  (40,0)   .0000
Influence score for  (28,0) ->  (41,0)   .3103
Influence score for  (15,0) ->  (41,0)   .0000
Influence score for  (49,0) ->  (42,0)   .0000
Influence score for   (3,0) ->  (42,0)   .1644
Influence score for  (26,0) ->  (43,0)   .0000
Influence score for   (3,0) ->  (43,0)   -.1667
Influence score for  (13,0) ->  (44,0)   .2052
Influence score for   (3,0) ->  (44,0)   .3307
Influence score for  (40,0) ->  (45,0)   .1644
Influence score for  (11,0) ->  (45,0)   .3144
Influence score for  (18,0) ->  (46,0)   .3279
Influence score for  (14,0) ->  (46,0)   .2332
Influence score for  (27,0) ->  (47,0)   .6554
Influence score for  (33,0) ->  (48,0)   .0000
Influence score for  (17,0) ->  (48,0)   .4209
Influence score for  (20,0) ->  (49,0)   .0000
Influence score for   (5,0) ->  (49,0)   .1591
Influence score for  (17,0) ->  (50,0)   .0000
Influence score for  (14,0) ->  (50,0)   -.3271

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8207.3372\nProject: 50.4\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    1->0;
    28->0;
    46->0;
    4->1;
    12->1;
    0->2;
    28->2;
    48->2;
    13->3;
    20->3;
    35->4;
    50->4;
    13->5;
    25->5;
    13->6;
    36->6;
    3->7;
    20->7;
    0->8;
    27->8;
    40->9;
    42->9;
    12->10;
    14->10;
    6->11;
    33->11;
    13->12;
    42->12;
    13->14;
    29->14;
    28->15;
    48->15;
    11->16;
    35->16;
    28->17;
    39->17;
    27->18;
    16->19;
    40->19;
    13->20;
    6->21;
    40->21;
    3->22;
    12->22;
    6->23;
    28->23;
    11->24;
    27->24;
    3->25;
    40->25;
    12->26;
    40->26;
    3->27;
    36->27;
    3->28;
    5->28;
    17->29;
    23->29;
    3->30;
    40->30;
    13->31;
    42->31;
    44->32;
    45->32;
    0->33;
    14->33;
    17->34;
    28->34;
    13->35;
    21->35;
    3->36;
    26->36;
    27->37;
    38->37;
    11->38;
    19->38;
    6->39;
    42->39;
    7->40;
    13->40;
    15->41;
    28->41;
    3->42;
    49->42;
    3->43;
    26->43;
    3->44;
    13->44;
    11->45;
    40->45;
    14->46;
    18->46;
    27->47;
    17->48;
    33->48;
    5->49;
    20->49;
    14->50;
    17->50;
}

